Publications

Thesis and Dissertations

Doctoral Dissertation (2011)
Acceleration of Astrophysical Simulations with Special Hardware
G Marcus
University of Heidelberg, 173 pages.
http://www.ub.uni-heidelberg.de/archiv/11757/

Master Thesis (2003)
Diseño e Implementación de un Coprocesador basado en FPGA para el reconocedor de voz SPHINX
G Marcus
Instituto Tecnologico y de Estudios Superiores de Monterrey, 137 pages.

Journals

PRACE Award 2011 at the International Supercomputing Conference (ISC) 2011
Astrophysical particle simulations with large custom GPU clusters on three continents
R Spurzem, P Berczik, I Berentzen, K Nitadori, T Hamada, G Marcus, A Kugel, R Männer, J Fiestas, R Banerjee, R Klessen
Computer Science-Research and Development, Vol. 26 Nr. 3-4. Springer Verlag (2011)
http://www.springerlink.com/content/v25v0551wt05g5j2/

Haralick’s Texture Features Computation Accelerated by GPUs for Biological Applications
M Gipp, G Marcus, N Harder, A Suratanee, K Rohr, R König, R Männer.
Proceedings of the HPSC 2009 (2010) TBP

Haralick’s Texture Features Computed by GPUs for Biological Applications
M Gipp, G Marcus, N Harder, A Suratanee, K Rohr, R König, R Männer
IAENG International Journal of Computer Science (2009)
http://www.iaeng.org/IJCS/issues_v36/issue_1/IJCS_36_1_09.pdf

Accelerating astrophysical particle simulations with programmable hardware (FPGA and GPUs)
R Spurzem, P Berczik, G Marcus, A Kugel, G Lienhart, I Berentzen, R Männer, R Klessen, R Banerjee
Computer Science – Research and Development. Springer Verlag (2009)
http://www.springerlink.com/content/ew838w1334511061/

Conferences

Device Mechanism: A Structured Device Driver Development Approach
Raul Schmidlin Fajardo Silva, G. Marcus
High Assurance Systems Engineering Symposium (2012)

Astrophysical SPH Simulations with raceSPH Library
L Liu, G Marcus, P Berczik, T Hamada, I Berentzen, A Kugel, R Männer, R Banerjee, R Klessen, R Spurzem
Conference on Frontiers of GPU Computing (2011)
http://dx.doi.org/10.1109/CSE.2011.105

The MPRACE framework: An open source stack for communication with custom FPGA-based accelerators
G Marcus, W Gao, A Kugel, R Männer
Programmable Logic (SPL), 2011 VII Southern Conference on, pp.155–160. (2011)
http://dx.doi.org/10.1109/SPL.2011.5782641

Implementation of Smith-Waterman Algorithm in OpenCL for GPUs
D Razmyslovich, G Marcus, M Gipp, M Zapatka, A Szillus
PDMC-HIBI ’10: Proceedings of the 2010 Ninth International Workshop on Parallel and Distributed Methods in Verification, and Second International Workshop on High Performance Computational Systems Biology, pp.48–56 (2010)
http://doi.ieeecomputersociety.org/10.1109/PDMC-HiBi.2010.16

Accelerating Smoothed Particle Hydrodynamics for Astrophysical Simulations: A comparison of FPGAs and GPUs
G Marcus, A Kugel, R Männer, P Berczik, I Berentzen, R Spurzem, T Naab, M Hilz, A Burkert
Proceedings of the 3rd SPHERIC workshop (2008)

Accelerating the Computation of Haralick’s Texture Features using Graphics Processing Units (GPUs)
M Gipp, G Marcus, N Harder, A Suratanee, K Rohr, R König, R Männer
Proceedings of the World Congress on Engineering (2008)
http://www.iaeng.org/publication/WCE2008/WCE2008_pp587-592.pdf

Special, hardware accelerated, parallel SPH code for galaxy evolution
P Berczik, N Nakasato, I Berentzen, R Spurzem, G Marcus, G Lienhart, A Kugel, R Männer, A Burkert, M Wetzstein
Proceedings of the 2nd SPHERIC Workshop (2007)
http://webs.uvigo.es/spheric/documents/Spheric_Book.pdf

An FPGA-based hardware coprocessor for SPH computations
G Marcus, G Lienhart, A Kugel, R Männer, P Berczik, R Spurzem, M Wetzstein, T Naab, A Burkert
Proceedings of the 2nd SPHERIC Workshop (2007)
http://webs.uvigo.es/spheric/documents/Spheric_Book.pdf

On Buffer Management Strategies for High Performance Computing with Reconfigurable Hardware
G Marcus Martinez, G Lienhart, A Kugel, R Männer
Field Programmable Logic and Applications, 2006. FPL ’06. (2006) pp. 1-6
http://dx.doi.org/10.1109/FPL.2006.311235

Rapid Design of Special-Purpose Pipeline Processors with FPGAs and its Application to Computational Fluid Dynamics
G Lienhart, G Marcus Martinez, A Kugel, R Männer
Field-Programmable Custom Computing Machines, 2006. FCCM ’06. 14th Annual IEEE Symposium on (2006) pp. 301-302
http://dx.doi.org/10.1109/FCCM.2006.60

An FPGA-based coprocessor for the SPHINX speech recognition system: early experiences
G Marcus, J Nolazco-Flores
Proceedings of the 2005 International Conference on Reconfigurable Computing and FPGAs. ReConFig2005. (2005)
http://dx.doi.org/10.1109/RECONFIG.2005.10

A fully synthesizable single-precision, floating-point adder/substractor and multiplier in VHDL for General and Educational Use
G Marcus, P Hinojosa, A Avila, J Nolazco-Flores
Proceedings of the Fifth IEEE International Caracas Conference on Devices, Circuits and Systems (2004)
http://dx.doi.org/10.1109/ICCDCS.2004.1393405

Posters

Implementation of Smith-Waterman algorithm in OpenCL for GPUs
D Razmyslovich, G Marcus, M Gipp, M Zapatka, A Szillus
NVIDIA Research Summit, GPU Technology Conference 2010 (2010)
http://www.nvidia.com/content/GTC/posters/2010/I16-Implementation-of-Smith-Waterman-algorithm-in-OpenCL-for-GPUs.pdf

Parallelization of the x264 Encoder using OpenCL
E Marth, G Marcus
SIGGRAPH Conference 2010 (2010)
http://dx.doi.org/10.1145/1836845.1836923

Haralick’s Texture Features Computations Accelerated by GPUs in Biological Applications
M Gipp, G Marcus, N Harder, A Suratanee, K Rohr, R König, R Männer
NVIDIA Research Summit 2009 (2009)
http://www.nvidia.com/content/GTC/posters/28_Gipp__Haralick_Texture_Features.pdf

Using GPUs for Lossless-JPEG real-time image decompression of high-throughput microscope data
T Bernard, G Marcus, M Gipp, R Männer
NVIDIA Research Summit 2009 (2009)
http://www.nvidia.com/content/GTC/posters/31_Marcus_Using_GPUs_for_Lossless-JPEG.pdf

From Newton to Einstein: N-body dynamics in galactic nuclei and SPH using new special hardware and Astrogrid-D
R Spurzem, P Berczik, I Berentzen, D Merritt, N Nakasato, HM Adorf, T Brüsemeister, P Schwekendiek, J Steinacker, J Wambsganß, G Marcus Martinez, G Lienhart, A Kugel, R Männer, A Burkert, T Naab, H Vasquez, M Wetzstein
SciDAC 2007. Journal of Physics: Conference Series (2007)
http://www.scidac.gov/Conference2007/posters/Spurzem_Rainer.pdf

Tech Reports

Optical Communication Tests with Active Buffer Board
W Gao, A Kugel, G Marcus, M Stapelberg, R Männer
CBM Progress Report 2009 (2010) pp. 55
https://www.gsi.de/documents/DOC-2010-Apr-17-1.pdf

PCI Express DMA Engine Design
W Gao, A Kugel, R Männer, G Marcus
CBM Progress Report 2006 (2007) pp. 54
http://www.gsi.de/documents/DOC-2007-Mar-137-1.pdf